Brookhaven National Laboratory Genmoe Sequences Facility |
0-glycosylation sites in manunalian proteins |
123D Zimmer & Alexandrov |
16SMDB and 23SMDB |16S and 23S ribosomal RNA mutation database |
3Dee |database of protein structure domain definitions |
A Guide to Structure Prediction |This server |
Advanced BLAST2 Search at EMBL |
Alfonso Valencia Group |
Algorithms in molecular biology |
ALIGN |compendium of protein sequence alignments |
ALIGNMENT |
ALIGNMENT |
AMAS |analyse multiply aligned sequences |
AMAS Server|Livinstone & Barton |
Andrej Sali Group |
ANU Bioinformatics Hypermedia Serk,er |virus databases, classification and nomenclature of viruses |
ANU Molecular biology |
Archives for biological software and databases |
Argicultural Biotechnology Center, Hungary |
Asilomar Protein Structure Prediction Challenge |
ATCC |American type culture collection |
Australian National University Bioinformatics |
Barry Honig Group |
Barton group software |ALSCRIPT, AMPS, AMAS, STAMP, ASSP, and SCANPS |
Bayesian bioinformatics at Wadsworth Center |
BCM Genefinder |
BCM Search Launcher |makes multiple searches from one input |
BCM Search Launcher |pairwise sequence alignment |
BCM search launcher for multiple sequence alignments |
BCNI Search Launcher |protein secondary structure prediction |
Beckman Institute Theoretical Biophysics Group |
Best of Web 1994 |
Bio Online |
Biocomputing course resource list: course syllabi |
Bioinformatics and Computational Biology at George Mason University |
Bioinformatics Sites |
Bioinformatics Sites |
Bioinformatics WWW Sites |
BioMedNet Library |
BioNet On-line |
BioSCAN online at U. North Carolina |
Biotectmological Software and Internet journal |
Birkbeck College mirror |
Birkbeck Home Page |
BLITZ ULTRA Fast Search at EMBL |
Blocking Gibbs sampling for linkage analysis in very large pedigrees |
Blocks database |system for protein classification |
BMERC PSA Server Boston University |
Bootscanriing for viral recombinations |
Brookhanen FTP site |very, very slow from UK |
Brookhaven Protein Data Bank |PDB WWW |
Brookhaven Protein Data Bank WWW Server |get a PDB structure |
Cambridge Centre for Protein Engineering |
Cambridge Crystallographic Data Centre |
Cambridge Structural Database |
Carbohydrate databases |
CASP2 |1996 Web page |UK |
CASP2 |1996 Web page |US |
CATH: Protein Structure Classification |
Center for Biological Sequence Analysis |Denmark |
CEPH genotype database |
CGI guide |
Chaperonins web page |
Chris Sander Group |
Cladistic software |a list from the Willi Hennig Society |
ClustalW |
ClustalW |multiple sequence alignment at BCM |
Cohen group software rotamer library, BLoop, QPack, FOLD, Match, |
COILS |prediction of coiled coil regions in proteins |
CollaboratiN,e course in protein structure |
Compare your sequence to COG database |
Compilation of TRNA sequences and sequences of TRNA genes |
CONTENTS |
CRITICAL ASSESSMENT OF STRUCTURE PREDICTION |CASP OR ASILOMAR |
CRITICAL ASSESSMENT OF STRUCTURE PREDICTION |CASP OR ASILOMAR |
Cytokines web |
DALI compare protein structures in 3D |
DALI server for protein 3D structure searching |Liisa Holm’s method |
Daresbury Lab WWW server |
DARWIN system at ETH Zurich |
DAS |Dense Alignment Surface; prediction of transmembrane regions in proteins |
DashPat find sequence similarity using a hashcode comparison with a pattern library |
Database of Enzymes and Metabolic Pathways |Ei\IP |
DATABASES |
DATABASES OF LINKS |
DATABASES OF LINKS |
DATABASES |
David Eisenberg Group |
DBGET Database Links |
DBWatcher for Sun/Solaris |
DIALIGN |aligment program without explicit gap penalties |
DNA sequences |
DRAGON protein modelling tool using distance geometry |
DSC King & Sternberg |this server |
DSSP program |
E.coli database collection |ECDC |compilation of DNA sequences of E coli K 1 2 |
EBI Industry support |
EBI PDB retreival |very fast from UK |
EBI Protein topology atlas |
EBI Sequence searching |
EBI Server |
EcoCyc: Encyclopedia of Escherichia coli Genes and Metabolism |
ELECTRONIC JOURNALS |
ELECTRONIC JOURNALS |
EMBL Server |
EMBL WWW services |
ENZYME |nomenclature of enzymes |
Eukaryotic Pol 11 promoter prediction |
European Bioinformatics Institute |EBI |
ExPASy Molecular Biology Server |
ExPASy Molecular Biology Server |SwissProt, etc. |
FASTA-SWAP or FASTA-PAT search of a pattern database |profile and pattern searches |
FlyBase |Drosophila database |
Fred Cohen Group |
Frontiers in Bioscience |
FSSP |fold classification based on structure-structure aligmnent of proteins |
FTP of the above |
GenBank Database Query Form |get a GenBank entry |
Gene Discovery Page |
Gene Finding and Intron Splice Site Prediction |
Gene Finding and Intron Splice Site Prediction |
GENEMARK |WWW system for predicting protein coding regions |
GeneQuiz |automated analysis of genomes |
Genome data, etc. |
Genome data, etc. |
GenProtEc |genes and proteins of Escherichia coli |
GenQuest |Fasta, Blast, Smith Waterman; search in an@, database |
GENSCAN Web Ser-v,er: Complete gene structures in genomic DNA |
Geoff Barton Group |
George Church Group |
Glucocorticoid receptor resource |
Glycolsylation site prediction server |
GNA’s Virtual School of Natural Sciences |
GPCRD |G protein-coupled receptor data |
Graham Richards Group |
GRAIL and GENQUEST |E-mail sequence analysis, gene assembly, and sequence comparison |
GRAIL interface |protein coding regions and functional sites |
GRASP Anthony Nicholls, Columbia, USA. |
GRBase |database linking information on proteins involved in gene regulation |
Guide to HTML documents |
Guides for evaluation from Asilomar |
Haemophilus influenzae database |HIDC |genetic map, contigs, searchable index |
HAMSTeRS |haemophilia A mutation database and factor VIII mutation database |
Harvard Genome Research Databases and Selected Servers |
Heidelberg FTP server |
Heidelberg Gopher server |
Histone sequence database of highl@r conser,%,ed nucleoprotein sequences |
HIV Molecular Immunology Database, Los Alamos |
HIV Sequence Database, Los Alamos |
HMMER |source code for hidden Markov model software |
Homology Modelling |
Homology Modelling |
Hopkins Bio-Informatics Home Page |
HSSP |homology-derived secondary structure of proteins |
HTTPD software |
Human 2-D PAGE databases for proteome analysis in health and disease |
Human Genome Center Applications Baylor College of Medicine |
Human Genome Project at Columbia University |
Human Genome Project Information |
Human Genome Sequencing Center, Baylor College |
Human p53, hprt and lacz genes and mutations |
Human papillomaviruses database |
ICGEB Trieste |
IMGT |immunogenetics database |
Imperial College FTP site |
Imperial College, Department of Biochemistry |
Index of Biology Internet Servers, USGS |
Indiana Urtiversit@, IUBIO software and data |
Institute for Molecular Viriology |
Irwin D. Kuntz Group |
ISSD:Integrated Sequence-Structure Databsase incorporating Codons |
Janet Thornton Group |
John Moult Group |
Johns Hopkins Univ. OWL Web Server |
Journal of Biological Chemistry |
Journal of Molecular Biology |
K2D Secondary Structure from CD spectra Merelo & Andrade |Granada, Spain |
KabatMan |database of antibody structure and sequence information |
Keith Robison’s Journal list |
Kidne@, development database |
Laboratory of Molecular Biophysics Home Page |
Lawrence Livermore National Laboratory |
Links to other Bio-Web servers |
List of genome sequencing projects |
LISTA, LISTA-HOP and LISTA-HON |compilation of homology databases from yeast |
Locus specific mutation database |
Ludwig Institute for Cancer Research |
Macromolecular Structures Database |
Major 3D Structure Public Databases |
Major 3D Structure Public Databases |
Major Public Sequence Databases |
Major Public Sequence Databases |
Manchester Structural Chemistry Group |
Mandalay Scientific |Maryland |
Manfred Sippl Group |
Mark Sansom Group |
Marketa Zvelebil’s page |
MHCPEP |database of MHC-binding peptides |
Mike Sutcliffe Group |
Mirror of the above in Cambridge |
Miscellaneous links and Flowcharts |
Miscellaneous links and Flowcharts |
MIT GNU FTP site |
MITOMAP |human mitochondrial genome database |
Model Database FTP site |
MODELLER |Sali |
MODELLER Mirror FTP site |
MoIScript |
Molecular Biology Institute |UCLA |
MOLECULAR BIOLOGY SOFTWARE LINKS |
MOLECULAR BIOLOGY SOFTWARE LINKS |
Molecular biology software list at NIH |
Molecular Biophysics, Washingnton University, St. Louis |
Molecular Graphics and Modelling Society |
MOLECULAR GRAPHICS PACKAGES |
MOLECULAR GRAPHICS PACKAGES |
Molecular Modelling Servers and Databases |
Molecular Simulations – Quanta/Charmm etc |
Molecular Surface Package |
Molecules R Us |search and view a protein molecule |
MolMol Reto Koradi, ETH, Zurrich, C.H. |
Mosaic home page |
Mouse genome database |
Mouse knockout database |
MPDB |molecular probe database |
MuItPredict |predict secondary structure based on multiple sequence aligmuent |
Multiple Alignment and Phylogeny |
Multiple Alignment and Phylogeny |
National Biotechnology Information Facility |
Natonal Center for Biotechnology Information |
Nature |
NCBI: BLAST notebook |
NetGene |prediction of intron splice sites in human genes |
NetPlantGene |prediction of intron splice sites in Arabidopsis thaliana |
NETSCAPE HOME |
Network Science |
NIH Molecular Modeling Homepage |modelling homepage with links |
NIH PDB at a glance classification |useful |
nnPredict Cohen et al. |
NNSSP |prediction of protein secondary sturcture by nearest-neighbor algorithms |
NRL-3D |sequence-str-ucture database derived from PDB, pictures and searches |
NRSub |non-redundant database for Bacillus subtilis |
OCMS publications list |
OCMS publishers list |
O-GLYCBASE |a revised database of 0-glycosylated proteins |
Other information |
Other information |
OTHER LINKS OF INTEREST |
OTHER LINKS OF INTEREST |
Other organisms genome databases |ACeDB-C. elegans, DictyDB-Dictyostelium dis-coideum, MycDB-Mycobacteria, PathoGenes-fungal pat |
Other pages |
Other pages |
Other phylogen@, programs, a complication from PH’Y’LIP documentation |
Other Prediction Servers |
Other Prediction Servers |
Oxford Centre for Molecular Sciences Home Page |
Oxford University |
P,NA structure-sequence logo |
PAH mutation analysis |disease-producing human PAH loci |
Pairwise DNA alignment |LFASTA ACNUC at Lyon |
Pairwise protein alignment |SIM |
Pairwise Sequence and Structure Alignment |
Pairwise Sequence and Structure Alignment |
Pasteur Institute |
Pattern scan of proteins or nucleotides |
PDB Browser |
PDB Mirror at the EBI |
PEDROS List of Molecular Biology Search and Analysis Tools |
Peer Bork search list |motif/pattern/profile searches |
Perl documentation/tutorials |
Perl documentation/tutorials |
Perl manual |
Peter Kollman Group |
Ph.D COURSES OVER THE INTERNET |
Ph.D. course in biological sequence analysis and protein modeling |
Ph.D. COURSES OVER THE INTERNET |
PHD home page Rost & Sander |
PhD Threader |
PHYLIP |programs for inferring phylogenies |
Phylip Web Page |
Phylogenetic analysis programs |the tree of life list |
Pimall find sequence similarity using dynamic programming |
PIR-International Protein Sequence Database |
PREDATORFrischman & Argos |EMBL |
Prediction of HLA-binding peptides from sequences |
Prediction of HLA-binding peptides in HIV sequences |
PREDICTION OF PROTEIN STRUCTURE FROM SEQUENCE |
PREDICTION OF PROTEIN STRUCTURE FROM SEQUENCE |
Prepi Suhail Islam, ICRF, U.K. |
PRINTS |protein fingerprint database |
ProDom |protein domain database |
ProFit |protein least squares fitting software |
PROPSEARCH |search based on an-iino acid composition, EMBL |
PROSITE |functional protein sites |
PROSITE Database Searches |search for functional sites in your sequence |
Protein 3D structure |
Protein 3D structure |
Protein Disease Database |PDD |
Protein FOLD recognition |
Protein FOLD recognition |
Protein Modelling Discussion Group |
Protein Motif Searching |IBCP, France |
Protein Science |
Protein Science Gopher Server |
Protein Secondary structure prediction |
Protein secondary structure prediction |
Protein sequence analysis email server |Boston |
Protein sequence logos using relative entropy |
Protein structural analysis, BMERC |
Protein Structure Course |Birckbeck |
Protein Structure Prediction Center |US |
Proteome Research: New Frontiers in Functional Genomics |book contents |
PROWL-Protein Information Retrieval at Skirball Institute |
PSORT |prediction of protein-sorting signals and localization from sequence |
Publishing/publications pages |
Publishing/publications pages |
Quest Protein Database Center |Cold Spring Harbour |
RasMol manual |
Rasmol software and script documentation |
RasMol Roger Sayle, Glaxo, U.K. |
RDP |the Ribosomal Database Project |
REBASE |database of restriction enzymes and meth@rlases |
RNA modification database |
RNaseP database |
SAM Sequence alignment and modelling system |
SAM software for sequence consensus HMMs at UC Santa Cruz |
SBASE protein domains |an-notated protein sequence segments |
ScanProsite |ExPASy |
Science |
SCOP |structural classification of proteins , MRC |
Search using Entrez |i.e. MEDLINE |
SELECTED PREDICTION SERVERS |
SELECTED PREDICTION SERVERS |
Self Optomised Prediction method Deleage |IBCP, France |
SEQNET UK data service |
Sequence data |
Sequence data |
Sequence search protocol |integrated pattern search |
Sequence similarity search page at EBI |
SEQUENCE SIMILARITY SEARCHES |
SEQUENCE SIMILARITY SEARCHES |
Shoshanna Wodak Group |
SignalP |signal peptide and cleavage sites in gram+, gram-, and eukaryotic amino acid sequences |
SITES |
SITES |
Small RNA database, Baylor College of Medicine |
SMSS-2DPAGE |database of two-dimensional polyacrylamide gel electrophoresis |
Specialized Databases |
Specialized Databases |
SR-PDB |signal recognition particle database |
SRS Database Server |
SRS Sequence Retrieval System |network browser for databanks in molecular biology |
SSCP |secondary structure prediction content with amino acid composition |
SSearch |searches against a specified database |
SSP |Nearest-neighbor segment method Solovyev and Salamov |Baylor College |
SSPRED Argos et al. |
Structural Classification of Protein Domains Analytical Biostatistics Section |
Structure of large ribosomal subunit RNA |
Structure of small ribosomal subunit RNA |
Submission form for protein domain and foldclass prediction |
SUN site Northern Europe |
Survey of Molecular Biology Databases and Servers |
Swiss Model: automatic modeller |
SWISS-PROT |protein sequences |
The AAA superfamily |
The Antibody Resource Page |
The BioCatalog |
The EBI molecular biology software archive |
The NCBI WWW Entrez Browser |
The NIH Molecular Modeling Home Page |
The PRINTS/PROSITE scanner |search motif databases with query, sequence |
The URNA database, University of Texas |
The Virtual School of Niolecular Sciences |
Thyroid hormone receptor resource |
TIFR Molecular Biology Page |Bombay |
TIGR Database |
Times Higher Education Jobs gopher |
TMAP Argos |
TMpred Baylor College |
TRANSFAC |database on transcription factors and their DNA binding sites |
Translation start in vertebrate and A. thaliana DNA |
Transmembrane protein structure prediction |
Transmembrane protein structure prediction |
TransTerm |database of translational signals |
Tree of Life Home Page |information about phylogeny and biodiversity |
U.S. patent citation database |
UCLA-DOE Fold-Recognition Benchmark Home Page |
UCLA-DOE Fold-Recognition server |
UK MRC Human Genome Mapping Project Resource Centre |
UK Protein & Peptide Science Group |
University College Dept. of Biochemistry |
University of California at San Francisco |
Various Bio-inclined organisations |
Various Bio-inclined organisations |
VARIOUS BIO-INCLINED RESEARCH GROUPS |
VARIOUS BIO-INCLINED RESEARCH GROUPS |
Various crystallography pages |
Various institutions |
Various institutions |
VAST home page |NCBI |
VBASE human variable immunogluhn gene sequences |
Web Signal Scan Service |scan DNA sequences for eukaryotic transcriptional elements |
WebLogo |sequence logo |
WHAT IF |
WWW Consortium |
WWW for the Molecular Biologists and Biochemists |
WWW home page |
WWW pages |
WWW pages |
WWW Sequence query |in Lyon |
WWW Server for Virology, UW-Madison |
Neuro Genome Data |JAVA |
Laboratory results in Life Science |
Wang |proteins and microscopes |