| Brookhaven National Laboratory Genmoe Sequences Facility |
| 0-glycosylation sites in manunalian proteins |
| 123D Zimmer & Alexandrov |
| 16SMDB and 23SMDB |16S and 23S ribosomal RNA mutation database |
| 3Dee |database of protein structure domain definitions |
| A Guide to Structure Prediction |This server |
| Advanced BLAST2 Search at EMBL |
| Alfonso Valencia Group |
| Algorithms in molecular biology |
| ALIGN |compendium of protein sequence alignments |
| ALIGNMENT |
| ALIGNMENT |
| AMAS |analyse multiply aligned sequences |
| AMAS Server|Livinstone & Barton |
| Andrej Sali Group |
| ANU Bioinformatics Hypermedia Serk,er |virus databases, classification and nomenclature of viruses |
| ANU Molecular biology |
| Archives for biological software and databases |
| Argicultural Biotechnology Center, Hungary |
| Asilomar Protein Structure Prediction Challenge |
| ATCC |American type culture collection |
| Australian National University Bioinformatics |
| Barry Honig Group |
| Barton group software |ALSCRIPT, AMPS, AMAS, STAMP, ASSP, and SCANPS |
| Bayesian bioinformatics at Wadsworth Center |
| BCM Genefinder |
| BCM Search Launcher |makes multiple searches from one input |
| BCM Search Launcher |pairwise sequence alignment |
| BCM search launcher for multiple sequence alignments |
| BCNI Search Launcher |protein secondary structure prediction |
| Beckman Institute Theoretical Biophysics Group |
| Best of Web 1994 |
| Bio Online |
| Biocomputing course resource list: course syllabi |
| Bioinformatics and Computational Biology at George Mason University |
| Bioinformatics Sites |
| Bioinformatics Sites |
| Bioinformatics WWW Sites |
| BioMedNet Library |
| BioNet On-line |
| BioSCAN online at U. North Carolina |
| Biotectmological Software and Internet journal |
| Birkbeck College mirror |
| Birkbeck Home Page |
| BLITZ ULTRA Fast Search at EMBL |
| Blocking Gibbs sampling for linkage analysis in very large pedigrees |
| Blocks database |system for protein classification |
| BMERC PSA Server Boston University |
| Bootscanriing for viral recombinations |
| Brookhanen FTP site |very, very slow from UK |
| Brookhaven Protein Data Bank |PDB WWW |
| Brookhaven Protein Data Bank WWW Server |get a PDB structure |
| Cambridge Centre for Protein Engineering |
| Cambridge Crystallographic Data Centre |
| Cambridge Structural Database |
| Carbohydrate databases |
| CASP2 |1996 Web page |UK |
| CASP2 |1996 Web page |US |
| CATH: Protein Structure Classification |
| Center for Biological Sequence Analysis |Denmark |
| CEPH genotype database |
| CGI guide |
| Chaperonins web page |
| Chris Sander Group |
| Cladistic software |a list from the Willi Hennig Society |
| ClustalW |
| ClustalW |multiple sequence alignment at BCM |
| Cohen group software rotamer library, BLoop, QPack, FOLD, Match, |
| COILS |prediction of coiled coil regions in proteins |
| CollaboratiN,e course in protein structure |
| Compare your sequence to COG database |
| Compilation of TRNA sequences and sequences of TRNA genes |
| CONTENTS |
| CRITICAL ASSESSMENT OF STRUCTURE PREDICTION |CASP OR ASILOMAR |
| CRITICAL ASSESSMENT OF STRUCTURE PREDICTION |CASP OR ASILOMAR |
| Cytokines web |
| DALI compare protein structures in 3D |
| DALI server for protein 3D structure searching |Liisa Holm’s method |
| Daresbury Lab WWW server |
| DARWIN system at ETH Zurich |
| DAS |Dense Alignment Surface; prediction of transmembrane regions in proteins |
| DashPat find sequence similarity using a hashcode comparison with a pattern library |
| Database of Enzymes and Metabolic Pathways |Ei\IP |
| DATABASES |
| DATABASES OF LINKS |
| DATABASES OF LINKS |
| DATABASES |
| David Eisenberg Group |
| DBGET Database Links |
| DBWatcher for Sun/Solaris |
| DIALIGN |aligment program without explicit gap penalties |
| DNA sequences |
| DRAGON protein modelling tool using distance geometry |
| DSC King & Sternberg |this server |
| DSSP program |
| E.coli database collection |ECDC |compilation of DNA sequences of E coli K 1 2 |
| EBI Industry support |
| EBI PDB retreival |very fast from UK |
| EBI Protein topology atlas |
| EBI Sequence searching |
| EBI Server |
| EcoCyc: Encyclopedia of Escherichia coli Genes and Metabolism |
| ELECTRONIC JOURNALS |
| ELECTRONIC JOURNALS |
| EMBL Server |
| EMBL WWW services |
| ENZYME |nomenclature of enzymes |
| Eukaryotic Pol 11 promoter prediction |
| European Bioinformatics Institute |EBI |
| ExPASy Molecular Biology Server |
| ExPASy Molecular Biology Server |SwissProt, etc. |
| FASTA-SWAP or FASTA-PAT search of a pattern database |profile and pattern searches |
| FlyBase |Drosophila database |
| Fred Cohen Group |
| Frontiers in Bioscience |
| FSSP |fold classification based on structure-structure aligmnent of proteins |
| FTP of the above |
| GenBank Database Query Form |get a GenBank entry |
| Gene Discovery Page |
| Gene Finding and Intron Splice Site Prediction |
| Gene Finding and Intron Splice Site Prediction |
| GENEMARK |WWW system for predicting protein coding regions |
| GeneQuiz |automated analysis of genomes |
| Genome data, etc. |
| Genome data, etc. |
| GenProtEc |genes and proteins of Escherichia coli |
| GenQuest |Fasta, Blast, Smith Waterman; search in an@, database |
| GENSCAN Web Ser-v,er: Complete gene structures in genomic DNA |
| Geoff Barton Group |
| George Church Group |
| Glucocorticoid receptor resource |
| Glycolsylation site prediction server |
| GNA’s Virtual School of Natural Sciences |
| GPCRD |G protein-coupled receptor data |
| Graham Richards Group |
| GRAIL and GENQUEST |E-mail sequence analysis, gene assembly, and sequence comparison |
| GRAIL interface |protein coding regions and functional sites |
| GRASP Anthony Nicholls, Columbia, USA. |
| GRBase |database linking information on proteins involved in gene regulation |
| Guide to HTML documents |
| Guides for evaluation from Asilomar |
| Haemophilus influenzae database |HIDC |genetic map, contigs, searchable index |
| HAMSTeRS |haemophilia A mutation database and factor VIII mutation database |
| Harvard Genome Research Databases and Selected Servers |
| Heidelberg FTP server |
| Heidelberg Gopher server |
| Histone sequence database of highl@r conser,%,ed nucleoprotein sequences |
| HIV Molecular Immunology Database, Los Alamos |
| HIV Sequence Database, Los Alamos |
| HMMER |source code for hidden Markov model software |
| Homology Modelling |
| Homology Modelling |
| Hopkins Bio-Informatics Home Page |
| HSSP |homology-derived secondary structure of proteins |
| HTTPD software |
| Human 2-D PAGE databases for proteome analysis in health and disease |
| Human Genome Center Applications Baylor College of Medicine |
| Human Genome Project at Columbia University |
| Human Genome Project Information |
| Human Genome Sequencing Center, Baylor College |
| Human p53, hprt and lacz genes and mutations |
| Human papillomaviruses database |
| ICGEB Trieste |
| IMGT |immunogenetics database |
| Imperial College FTP site |
| Imperial College, Department of Biochemistry |
| Index of Biology Internet Servers, USGS |
| Indiana Urtiversit@, IUBIO software and data |
| Institute for Molecular Viriology |
| Irwin D. Kuntz Group |
| ISSD:Integrated Sequence-Structure Databsase incorporating Codons |
| Janet Thornton Group |
| John Moult Group |
| Johns Hopkins Univ. OWL Web Server |
| Journal of Biological Chemistry |
| Journal of Molecular Biology |
| K2D Secondary Structure from CD spectra Merelo & Andrade |Granada, Spain |
| KabatMan |database of antibody structure and sequence information |
| Keith Robison’s Journal list |
| Kidne@, development database |
| Laboratory of Molecular Biophysics Home Page |
| Lawrence Livermore National Laboratory |
| Links to other Bio-Web servers |
| List of genome sequencing projects |
| LISTA, LISTA-HOP and LISTA-HON |compilation of homology databases from yeast |
| Locus specific mutation database |
| Ludwig Institute for Cancer Research |
| Macromolecular Structures Database |
| Major 3D Structure Public Databases |
| Major 3D Structure Public Databases |
| Major Public Sequence Databases |
| Major Public Sequence Databases |
| Manchester Structural Chemistry Group |
| Mandalay Scientific |Maryland |
| Manfred Sippl Group |
| Mark Sansom Group |
| Marketa Zvelebil’s page |
| MHCPEP |database of MHC-binding peptides |
| Mike Sutcliffe Group |
| Mirror of the above in Cambridge |
| Miscellaneous links and Flowcharts |
| Miscellaneous links and Flowcharts |
| MIT GNU FTP site |
| MITOMAP |human mitochondrial genome database |
| Model Database FTP site |
| MODELLER |Sali |
| MODELLER Mirror FTP site |
| MoIScript |
| Molecular Biology Institute |UCLA |
| MOLECULAR BIOLOGY SOFTWARE LINKS |
| MOLECULAR BIOLOGY SOFTWARE LINKS |
| Molecular biology software list at NIH |
| Molecular Biophysics, Washingnton University, St. Louis |
| Molecular Graphics and Modelling Society |
| MOLECULAR GRAPHICS PACKAGES |
| MOLECULAR GRAPHICS PACKAGES |
| Molecular Modelling Servers and Databases |
| Molecular Simulations – Quanta/Charmm etc |
| Molecular Surface Package |
| Molecules R Us |search and view a protein molecule |
| MolMol Reto Koradi, ETH, Zurrich, C.H. |
| Mosaic home page |
| Mouse genome database |
| Mouse knockout database |
| MPDB |molecular probe database |
| MuItPredict |predict secondary structure based on multiple sequence aligmuent |
| Multiple Alignment and Phylogeny |
| Multiple Alignment and Phylogeny |
| National Biotechnology Information Facility |
| Natonal Center for Biotechnology Information |
| Nature |
| NCBI: BLAST notebook |
| NetGene |prediction of intron splice sites in human genes |
| NetPlantGene |prediction of intron splice sites in Arabidopsis thaliana |
| NETSCAPE HOME |
| Network Science |
| NIH Molecular Modeling Homepage |modelling homepage with links |
| NIH PDB at a glance classification |useful |
| nnPredict Cohen et al. |
| NNSSP |prediction of protein secondary sturcture by nearest-neighbor algorithms |
| NRL-3D |sequence-str-ucture database derived from PDB, pictures and searches |
| NRSub |non-redundant database for Bacillus subtilis |
| OCMS publications list |
| OCMS publishers list |
| O-GLYCBASE |a revised database of 0-glycosylated proteins |
| Other information |
| Other information |
| OTHER LINKS OF INTEREST |
| OTHER LINKS OF INTEREST |
| Other organisms genome databases |ACeDB-C. elegans, DictyDB-Dictyostelium dis-coideum, MycDB-Mycobacteria, PathoGenes-fungal pat |
| Other pages |
| Other pages |
| Other phylogen@, programs, a complication from PH’Y’LIP documentation |
| Other Prediction Servers |
| Other Prediction Servers |
| Oxford Centre for Molecular Sciences Home Page |
| Oxford University |
| P,NA structure-sequence logo |
| PAH mutation analysis |disease-producing human PAH loci |
| Pairwise DNA alignment |LFASTA ACNUC at Lyon |
| Pairwise protein alignment |SIM |
| Pairwise Sequence and Structure Alignment |
| Pairwise Sequence and Structure Alignment |
| Pasteur Institute |
| Pattern scan of proteins or nucleotides |
| PDB Browser |
| PDB Mirror at the EBI |
| PEDROS List of Molecular Biology Search and Analysis Tools |
| Peer Bork search list |motif/pattern/profile searches |
| Perl documentation/tutorials |
| Perl documentation/tutorials |
| Perl manual |
| Peter Kollman Group |
| Ph.D COURSES OVER THE INTERNET |
| Ph.D. course in biological sequence analysis and protein modeling |
| Ph.D. COURSES OVER THE INTERNET |
| PHD home page Rost & Sander |
| PhD Threader |
| PHYLIP |programs for inferring phylogenies |
| Phylip Web Page |
| Phylogenetic analysis programs |the tree of life list |
| Pimall find sequence similarity using dynamic programming |
| PIR-International Protein Sequence Database |
| PREDATORFrischman & Argos |EMBL |
| Prediction of HLA-binding peptides from sequences |
| Prediction of HLA-binding peptides in HIV sequences |
| PREDICTION OF PROTEIN STRUCTURE FROM SEQUENCE |
| PREDICTION OF PROTEIN STRUCTURE FROM SEQUENCE |
| Prepi Suhail Islam, ICRF, U.K. |
| PRINTS |protein fingerprint database |
| ProDom |protein domain database |
| ProFit |protein least squares fitting software |
| PROPSEARCH |search based on an-iino acid composition, EMBL |
| PROSITE |functional protein sites |
| PROSITE Database Searches |search for functional sites in your sequence |
| Protein 3D structure |
| Protein 3D structure |
| Protein Disease Database |PDD |
| Protein FOLD recognition |
| Protein FOLD recognition |
| Protein Modelling Discussion Group |
| Protein Motif Searching |IBCP, France |
| Protein Science |
| Protein Science Gopher Server |
| Protein Secondary structure prediction |
| Protein secondary structure prediction |
| Protein sequence analysis email server |Boston |
| Protein sequence logos using relative entropy |
| Protein structural analysis, BMERC |
| Protein Structure Course |Birckbeck |
| Protein Structure Prediction Center |US |
| Proteome Research: New Frontiers in Functional Genomics |book contents |
| PROWL-Protein Information Retrieval at Skirball Institute |
| PSORT |prediction of protein-sorting signals and localization from sequence |
| Publishing/publications pages |
| Publishing/publications pages |
| Quest Protein Database Center |Cold Spring Harbour |
| RasMol manual |
| Rasmol software and script documentation |
| RasMol Roger Sayle, Glaxo, U.K. |
| RDP |the Ribosomal Database Project |
| REBASE |database of restriction enzymes and meth@rlases |
| RNA modification database |
| RNaseP database |
| SAM Sequence alignment and modelling system |
| SAM software for sequence consensus HMMs at UC Santa Cruz |
| SBASE protein domains |an-notated protein sequence segments |
| ScanProsite |ExPASy |
| Science |
| SCOP |structural classification of proteins , MRC |
| Search using Entrez |i.e. MEDLINE |
| SELECTED PREDICTION SERVERS |
| SELECTED PREDICTION SERVERS |
| Self Optomised Prediction method Deleage |IBCP, France |
| SEQNET UK data service |
| Sequence data |
| Sequence data |
| Sequence search protocol |integrated pattern search |
| Sequence similarity search page at EBI |
| SEQUENCE SIMILARITY SEARCHES |
| SEQUENCE SIMILARITY SEARCHES |
| Shoshanna Wodak Group |
| SignalP |signal peptide and cleavage sites in gram+, gram-, and eukaryotic amino acid sequences |
| SITES |
| SITES |
| Small RNA database, Baylor College of Medicine |
| SMSS-2DPAGE |database of two-dimensional polyacrylamide gel electrophoresis |
| Specialized Databases |
| Specialized Databases |
| SR-PDB |signal recognition particle database |
| SRS Database Server |
| SRS Sequence Retrieval System |network browser for databanks in molecular biology |
| SSCP |secondary structure prediction content with amino acid composition |
| SSearch |searches against a specified database |
| SSP |Nearest-neighbor segment method Solovyev and Salamov |Baylor College |
| SSPRED Argos et al. |
| Structural Classification of Protein Domains Analytical Biostatistics Section |
| Structure of large ribosomal subunit RNA |
| Structure of small ribosomal subunit RNA |
| Submission form for protein domain and foldclass prediction |
| SUN site Northern Europe |
| Survey of Molecular Biology Databases and Servers |
| Swiss Model: automatic modeller |
| SWISS-PROT |protein sequences |
| The AAA superfamily |
| The Antibody Resource Page |
| The BioCatalog |
| The EBI molecular biology software archive |
| The NCBI WWW Entrez Browser |
| The NIH Molecular Modeling Home Page |
| The PRINTS/PROSITE scanner |search motif databases with query, sequence |
| The URNA database, University of Texas |
| The Virtual School of Niolecular Sciences |
| Thyroid hormone receptor resource |
| TIFR Molecular Biology Page |Bombay |
| TIGR Database |
| Times Higher Education Jobs gopher |
| TMAP Argos |
| TMpred Baylor College |
| TRANSFAC |database on transcription factors and their DNA binding sites |
| Translation start in vertebrate and A. thaliana DNA |
| Transmembrane protein structure prediction |
| Transmembrane protein structure prediction |
| TransTerm |database of translational signals |
| Tree of Life Home Page |information about phylogeny and biodiversity |
| U.S. patent citation database |
| UCLA-DOE Fold-Recognition Benchmark Home Page |
| UCLA-DOE Fold-Recognition server |
| UK MRC Human Genome Mapping Project Resource Centre |
| UK Protein & Peptide Science Group |
| University College Dept. of Biochemistry |
| University of California at San Francisco |
| Various Bio-inclined organisations |
| Various Bio-inclined organisations |
| VARIOUS BIO-INCLINED RESEARCH GROUPS |
| VARIOUS BIO-INCLINED RESEARCH GROUPS |
| Various crystallography pages |
| Various institutions |
| Various institutions |
| VAST home page |NCBI |
| VBASE human variable immunogluhn gene sequences |
| Web Signal Scan Service |scan DNA sequences for eukaryotic transcriptional elements |
| WebLogo |sequence logo |
| WHAT IF |
| WWW Consortium |
| WWW for the Molecular Biologists and Biochemists |
| WWW home page |
| WWW pages |
| WWW pages |
| WWW Sequence query |in Lyon |
| WWW Server for Virology, UW-Madison |
| Neuro Genome Data |JAVA |
| Laboratory results in Life Science |
| Wang |proteins and microscopes |
